Was the PCM changed? The difference between engines would require a different PCM. This PCM would also be calibrated to a different transmission.
Assuming you had a Vulcan and a AX4S, then put in a Duratec you would have to have a Duratec PCM which was matched to a AX4S. AFAIK most Duratecs came with the AX4N. The year also makes a difference as the earlier AX4Ns had different final drive ratios.
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The didn't take out a vulcan and put in a tec, believe me. I did that on mine, and it's a pain in the ass, and a lot of time and money. They swapped the same engine back in. The PCM shouldn't have been an issue, but if she hasn't driven the car enough for it to relearn all the shift points, fuel trims, etc, then she needs to drive for a while first to allow that to happen, before thinking there's something wrong.
As far as a chart of shift points, the tranny will shift at a wide range of road speeds and engine rpms based on the driving conditions - ie easy driving, hard driving, wide open throttle, a/c on or off, high load, etc. Just drive it for a week or so and see how it gets.