I think today I might have finally figured out what's going on. When I removed the factory RCU from the trunk a few weeks ago, I also disconnected the black ground wire from the left fender wall because I thought that it was only grounding the factory RCU. After someone mentioned that my stereo is having problems due to bad grounding, it struck me suddenly that this black wire was probably grounding the head unit too! (Can someone confirm this please? Where IS the head unit supposed to be grounded? I see a wire that's marked as ground wire on the harness, but I have no idea where it connects on the other end). Anyways, it seems like ALL electrical issues stopped after this. I keep fingers crossed hoping that this problem has been fixed.