You wont want an AX4S in that. You would also need to change out the computer if you did. It's just not recommended for the Duratec. I don't know of any Duratec's that came with an AX4S.
As I understand so long as you get the transmission from a donor that has the same engine you shouldn't have any problems.
Another possibility is just to repair the transmission. What exactly is wrong with it?
Saved by the Cross! Bled by a Taurus...
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Vulcan I - '97 Silver Taurus GL
Vulcan II - '97 Forest Green Taurus GL
Vulcan III - '02 Tan Sable LS
SHO-HIS-Love - '96 Medium Willow SHO
SHO-Foo - '96 Medium Willow SHO